Multiscale Modeling: A Review SpringerLink

September 7, 2023

Multi-scale analysis

For example, SCINet16 utilizes multiple convolutions to extract temporal information from different down sampled versions of the series. TimesNet15 on the other hand, converts the original one-dimensional time series into two-dimensional series and uses convolutions to capture inter-period and intra-period information. Some other linear models based on Multi-Layer Perceptron (MLP) have been proposed in6,17 which exhibit an effective performance in time series domain.

Multiscale and Multidisciplinary Modeling, Experiments and Design

Alternatively, multiple vegetation submodels might be run concurrently, and a single forest fire submodel might run on the combined domain. The vegetation submodels would have mD interactions, exchanging only boundary information, but they would have sD interactions with the fire submodel. A mapper would be placed between the vegetation and forest fire submodels to stitch the grids of the vegetation submodels together, so that it would not have to be aware whether the vegetation is simulated by a single or by multiple domains.

Alphanumerical scales

Multi-scale analysis

Can theory-driven machine learning, combined with sparse and indirect measurements, produce a mechanistic understanding of the emergence of biological function? Understanding the emergence of function is of critical importance in biology and medicine, environmental studies, biotechnology, and other biological sciences. The study of emergence critically relies on our ability to model collective action on a lower scale to predict how the phenomena on the higher scale emerges from this collective action. Mappers are useful to optimize a coupling, for instance to avoid Multi-scale analysis repeating twice the same data transformation for two different recipients. They are also needed to build complex couplings, and to implement synchronization operations when more than two submodels are coupled.

Figure 4.

However, a performance study of DMC can be found in another contribution in this Theme Issue 10. In what follows we focus on the conceptual and theoretical ideas of the framework. Engquist, “The heterogeneous multi-scale method for homogenization problems,” submitted to SIAM J. Multiscale Modeling and Simulations. One full-stack developer technique used to account for microstructural nuances is to use an analytical equation to model behavior. Engineers develop these equations empirically by witnessing controlled experiments.

The different workflows identified in our framework, and corresponding to the coupling of two submodels. In the example of the growth of biological cells subjected to the blood flow shear stress, there is a clear time-scale separation between the two processes (see figure 7 and 22). Therefore, the converged flow field is first sent from the physical model BF to the biological one, in order to define the SMC proliferation rate in SMC (OBFf→SSMC).

This could, for example, have significant applications in predicting pharmaceutical efficacy for patients with particular genetic inheritance in personalized medicine. The first challenge is to create robust predictive mechanistic models when dealing with sparse data. The lack of sufficient data is a common problem in modeling biological, biomedical, and behavioral systems. For example, it can result from an inadequate experimental resolution or an incomplete medical history. A critical first step is to systematically identify the missing information.

Multi-scale analysis

  • The different workflows identified in our framework, and corresponding to the coupling of two submodels.
  • This makes it difficult to know whether the analysis predicts the correct answer for the right reasons.
  • Systems of ordinary differential equations allow us to explore the dynamic interplay of key characteristic features to understand the sequence of events, the progression of disease, or the timeline of treatment.
  • Can we harness biological learning to design more efficient algorithms and architectures?

They also design a causal GNN for feature extraction and reasoning network to capture the relations between historical time steps and forecasting horizon. Recent studies in time series analysis have also focused on reducing the computational and memory requirements related to processing large datasets. For instance, Ref.23 introduced TimeDC, a time series dataset condensation framework to preserve complex temporal relations while significantly reducing dataset size. Where machine learning reveals correlation, multiscale modeling can probe whether the correlation is causal; where multiscale modeling identifies mechanisms, machine learning, coupled with Bayesian methods, can quantify uncertainty. This natural synergy presents exciting challenges and new opportunities in the biological, biomedical, and behavioral sciences.28 On a more fundamental level, there is a pressing need to develop the appropriate theories to integrate machine learning and multiscale modeling.

Multi-scale analysis

Time series forecasting results using our model without those components are reported in Table 6. As evidenced by the table, each of the multi-scale embedding, channel-wise encoder and multi-step decoder modules contribute to performance promotion. For example, in ETTh1 forecasting dataset, multi-scale embedding improves the MSE error rate by approximately 2% in prediction length of 720 and the channel-wise encoder promotes the prediction accuracy (MSE) by 2.5%. Our multi-step decoder, improves the prediction error in most cases, specifically when the forecast horizon is long, e.g. 720.

Key Objectives of Multiple-Scale Analysis:

It is based on new generic theoretical concepts describing the entire process, from design to execution. It facilitates the communication between scientists of different fields, provides a unified vision of multi-scale modelling and simulation, and offers a common framework for consistent new developments. Beyond its methodological contents, MMSF is operational and supported by a full implementation and execution framework, based on MUSCLE 2 and the idea of DMC and multi-scale parallelism. The MUSCLE 2 middleware offers a powerful, flexible and easy way to couple new or legacy submodels, independently of the programming language used to code them. The third step concerns the implementation of the single-scale models (or the reuse of existing ones), and the implementation of scale bridging techniques.

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